We recommend adding unit tests to all of your components in a project as soon as possible. Implementing unit tests not only ensures that your component works, but it also makes the project more maintainable in the long run as you will be notified when a component breaks.
This page describes how to add a unit test to your component.
Create unit test
Below is an example of how to add a unit test to a Viash component.
#!/bin/bash
## VIASH START
meta_executable = "target/example_bash"
## VIASH END
echo ">>> Create input test file"
echo "foo" > foo.txt
echo ">>> Run executable"
$meta_executable --input foo.txt --output bar.txt
echo ">>> Check whether output file exists"
[[ -f bar.txt ]] ( echo "Output file could not be found!" && exit 1)
echo ">>> Check whether input and output file are the same"
cmp foo.txt bar.tx ( echo "Input and output files are different!" && exit 1)
echo ">>> Test finished successfully"
using System;
using System. IO ;
using System. Diagnostics ;
// VIASH START
var meta = new {
executable = "target/example_csharp"
};
// VIASH END
string inputPath = "foo.txt" ;
string outputPath = "bar.txt" ;
string content = "hello \n there \n " ;
Console. WriteLine ( ">>> Create input test file" );
File. WriteAllText ( inputPath, content);
Console. WriteLine ( ">>> Run executable" );
var startInfo = new ProcessStartInfo ( meta. executable )
{
Arguments = $"--input {inputPath} --output {outputPath}" ,
UseShellExecute = false ,
RedirectStandardOutput = true ,
CreateNoWindow = true
};
using ( var cmd = Process. Start ( startInfo))
{
cmd. WaitForExit ();
}
Console. WriteLine ( ">>> Check whether output file exists" );
if (! File. Exists ( outputPath)) {
Console. WriteLine ( "Output file was not found" );
Environment. Exit ( 1 );
}
Console. WriteLine ( ">>> Check whether input and output file are the same" );
var outputLines = File. ReadAllText ( outputPath);
if ( content != outputLines) {
Console. WriteLine (
"Input and output should be the same \n " +
$"expected content: {content} \n " +
$"found: {outputLines} \n "
);
Environment. Exit ( 1 );
}
Console. WriteLine ( ">>> Test finished successfully" );
const fs = require ('fs' );
const child_process = require ('child_process' );
// VIASH START
let meta = {
'executable' : 'target/example_js'
};
// VIASH END
const inputPath = 'foo.txt' ;
const outputPath = 'bar.txt' ;
const content = 'hello \n there \n ' ;
console . log ('>>> Create input test file' );
fs. writeFileSync (inputPath, content, 'utf8' );
console . log ('>>> Run executable' );
const cmdArgs = [
'--input' , inputPath,
'--output' , outputPath
];
const child = child_process. spawnSync (meta["executable" ], cmdArgs);
if (child. error ) {
console . error (`Error: ${ child. error } ` );
process . exit (1 );
}
console . log ('>>> Check whether output file exists' );
if (! fs. existsSync (outputPath)) {
console . error ('Output file was not found' );
process . exit (1 );
}
console . log ('>>> Check whether input and output file are the same' );
const outputLines = fs. readFileSync (outputPath, 'utf8' );
if (content !== outputLines) {
console . error (
`Input and output should be the same \n ` +
`expected content: ${ content}\n ` +
`found: ${ outputLines}\n `
);
process . exit (1 );
}
console . log ('>>> Test finished successfully' );
import subprocess
import os
input_path = "foo.txt"
output_path = "bar.txt"
content = "hello \n there \n "
## VIASH START
meta = {
"executable" : "target/example_python"
}
## VIASH END
print (">>> Create input test file" )
with open (input_path, "w" ) as file :
file .write(content)
print (">>> Run executable" )
cmd_args = [
meta["executable" ],
"--input" , input_path,
"--output" , output_path
]
subprocess.run(cmd_args, check= True )
print (">>> Check whether output file exists" )
assert os.path.exists(output_path), "Output file was not found"
print (">>> Check whether input and output file are the same" )
with open (output_path, "r" , encoding= "utf8" ) as file :
output_lines = file .read()
assert content == output_lines, \
"Input and output should be the same" \
f"expected content: { content} " \
f"found: { output_lines} "
print (">>> Test finished successfully" )
## VIASH START
meta <- list (
"target/example_r"
)
## VIASH END
input_path <- "foo.txt"
output_path <- "bar.txt"
content <- c ("hello" , "there" )
cat (">>> Create input test file \n " )
writeLines (content, input_path)
cat (">>> Run executable \n " )
system2 (
meta$ executable,
c (
"--input" , input_path,
"--output" , output_path
)
)
cat (">>> Check whether output file exists \n " )
if (! file.exists (output_path)) {
stop ("Output file was not found" )
}
cat (">>> Check whether input and output file are the same \n " )
output_lines <- readLines (output_path)
if (! identical (content, output_lines)) {
stop (paste0 (
"Input and output should be the same \n " ,
"expected content: " , content, " \n " ,
"found: " , output_lines, " \n "
))
}
cat (">>> Test finished successfully \n " )
import scala. sys. process. _
import java. nio. file.{ Files, Paths}
import scala. io. Source
// VIASH START
case class ViashMeta ( executable: String )
val meta = ViashMeta (
"target/example_scala"
)
// VIASH END
val inputPath = Paths. get ( "foo.txt" )
val outputPath = Paths. get ( "bar.txt" )
val content = "hello \n there"
println ( ">>> Create input test file" )
Files. write ( inputPath, content. getBytes ( "UTF-8" ))
println ( ">>> Run executable" )
s"${ meta. executable} --input $inputPath --output $outputPath" .!
println ( ">>> Check whether output file exists" )
assert ( Files. exists ( outputPath), "Output file not found" )
println ( ">>> Check whether input and output file are the same" )
val outputLines = Source . fromFile ( outputPath. toFile ()). getLines. mkString ( " \n " )
assert (
content == outputLines,
s""" Output not the same
expected: ' $content '
found: ' $outputLines '
""" . stripMargin
)
println ( ">>> Test finished successfully" )
Create an input file “foo.txt” with some sample content.
Run an executable file specified in the “meta” dictionary with the arguments “–input foo.txt” and “–output bar.txt”.
Check whether the output file “bar.txt” exists.
Check whether the content of the output file is the same as the content of the input file.
If both checks pass, the script prints “Test finished successfully”.
A test script doesn’t need to be written in the same scripting language as the main script, as long as all of the required dependencies are available. This means the main script could be written in R, but the unit test could be written in Bash.
Add test to config
Next, we need to add the unit test to the test_resources
section in the Viash config.
functionality :
name : example_bash
description : A minimal example component.
arguments :
- type : file
name : --input
example : file.txt
required : true
- type : file
name : --output
direction : output
example : output.txt
required : true
resources :
- type : bash_script
path : script.sh
test_resources :
- type : bash_script
path : test.sh
platforms :
- type : docker
image : bash:4.0
- type : native
- type : nextflow
functionality :
name : example_csharp
description : A minimal example component.
arguments :
- type : file
name : --input
example : file.txt
required : true
- type : file
name : --output
direction : output
example : output.txt
required : true
resources :
- type : csharp_script
path : script.csx
test_resources :
- type : csharp_script
path : test.csx
platforms :
- type : docker
image : ghcr.io/data-intuitive/dotnet-script:1.3.1
- type : native
- type : nextflow
functionality :
name : example_js
description : A minimal example component.
arguments :
- type : file
name : --input
example : file.txt
required : true
- type : file
name : --output
direction : output
example : output.txt
required : true
resources :
- type : javascript_script
path : script.js
test_resources :
- type : javascript_script
path : test.js
platforms :
- type : docker
image : node:19-bullseye-slim
- type : native
- type : nextflow
functionality :
name : example_python
description : A minimal example component.
arguments :
- type : file
name : --input
example : file.txt
required : true
- type : file
name : --output
direction : output
example : output.txt
required : true
resources :
- type : python_script
path : script.py
test_resources :
- type : python_script
path : test.py
platforms :
- type : docker
image : python:3.10-slim
- type : native
- type : nextflow
functionality :
name : example_r
description : A minimal example component.
arguments :
- type : file
name : --input
example : file.txt
required : true
- type : file
name : --output
direction : output
example : output.txt
required : true
resources :
- type : r_script
path : script.R
test_resources :
- type : r_script
path : test.R
platforms :
- type : docker
image : eddelbuettel/r2u:22.04
- type : native
- type : nextflow
functionality :
name : example_scala
description : A minimal example component.
arguments :
- type : file
name : --input
example : file.txt
required : true
- type : file
name : --output
direction : output
example : output.txt
required : true
resources :
- type : scala_script
path : script.scala
test_resources :
- type : scala_script
path : test.scala
platforms :
- type : docker
image : sbtscala/scala-sbt:eclipse-temurin-19_36_1.7.2_2.13.10
- type : native
- type : nextflow
Note that if you can add multiple unit tests to the test_resources
section, they will all be evaluated. You can also add other resources, similar to what is described in the page on adding resources .
Run the unit test
You can run the unit test as follows:
viash test config.vsh.yaml
Running tests in temporary directory: '/tmp/viash_test_example_bash14794286328033377286'
====================================================================
+/tmp/viash_test_example_bash14794286328033377286/build_executable/example_bash ---verbosity 6 ---setup cachedbuild
[notice] Building container 'example_bash:test' with Dockerfile
[info] Running 'docker build -t example_bash:test /tmp/viash_test_example_bash14794286328033377286/build_executable -f /tmp/viash_test_example_bash14794286328033377286/build_executable/tmp/dockerbuild-example_bash-cT83U2/Dockerfile'
#0 building with "default" instance using docker driver
#1 [internal] load build definition from Dockerfile
#1 transferring dockerfile: 286B done
#1 DONE 0.0s
#2 [internal] load .dockerignore
#2 transferring context: 2B done
#2 DONE 0.0s
#3 [internal] load metadata for docker.io/library/bash:4.0
#3 DONE 0.2s
#4 [1/2] FROM docker.io/library/bash:4.0@sha256:c3f15b07094d9ab918c1c11727315366146ed6d038c205998a88a574fbfbb618
#4 resolve docker.io/library/bash:4.0@sha256:c3f15b07094d9ab918c1c11727315366146ed6d038c205998a88a574fbfbb618 done
#4 extracting sha256:7264a8db6415046d36d16ba98b79778e18accee6ffa71850405994cffa9be7de
#4 extracting sha256:7264a8db6415046d36d16ba98b79778e18accee6ffa71850405994cffa9be7de 0.1s done
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#4 sha256:1524959eb2991d4955c72dac19a7309039ab41e07d7725719aa4188a8758fcba 5.77kB / 5.77kB done
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#4 sha256:c3f15b07094d9ab918c1c11727315366146ed6d038c205998a88a574fbfbb618 1.64kB / 1.64kB done
#4 extracting sha256:514122e757346f36c5ea4c08ed31060def944892e4cf79bcd2f97d99bb696785
#4 sha256:7a77c8495c2cb9cbd4f8f9ca9314d3d7648bfccd6f3bef9eea22bd82a7e1e583 343B / 343B 0.2s done
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#4 extracting sha256:7a77c8495c2cb9cbd4f8f9ca9314d3d7648bfccd6f3bef9eea22bd82a7e1e583 done
#4 DONE 0.3s
#5 [2/2] RUN :
#5 DONE 0.2s
#6 exporting to image
#6 exporting layers
#6 exporting layers 0.5s done
#6 writing image sha256:e3debee04989118c2d1e169b16523e86c520d48a2de7515fb48d5432124c937d done
#6 naming to docker.io/library/example_bash:test done
#6 DONE 0.5s
====================================================================
+/tmp/viash_test_example_bash14794286328033377286/test_test/test_executable
>>> Create input test file
>>> Run executable
Copying 'foo.txt' to 'bar.txt'.
>>> Check whether output file exists
>>> Check whether input and output file are the same
>>> Test finished successfully
====================================================================
SUCCESS! All 1 out of 1 test scripts succeeded!
Cleaning up temporary directory
viash test config.vsh.yaml
Running tests in temporary directory: '/tmp/viash_test_example_csharp15325612198478877336'
====================================================================
+/tmp/viash_test_example_csharp15325612198478877336/build_executable/example_csharp ---verbosity 6 ---setup cachedbuild
[notice] Building container 'example_csharp:test' with Dockerfile
[info] Running 'docker build -t example_csharp:test /tmp/viash_test_example_csharp15325612198478877336/build_executable -f /tmp/viash_test_example_csharp15325612198478877336/build_executable/tmp/dockerbuild-example_csharp-eNhxsj/Dockerfile'
#0 building with "default" instance using docker driver
#1 [internal] load .dockerignore
#1 transferring context: 2B done
#1 DONE 0.0s
#2 [internal] load build definition from Dockerfile
#2 transferring dockerfile: 322B done
#2 DONE 0.0s
#3 [internal] load metadata for ghcr.io/data-intuitive/dotnet-script:1.3.1
#3 DONE 0.3s
#4 [1/2] FROM ghcr.io/data-intuitive/dotnet-script:1.3.1@sha256:d95bf2a2b3e095e5b02960ab4ddd4674d798a1493ed0dc5cf427c77a5ed90ed3
#4 resolve ghcr.io/data-intuitive/dotnet-script:1.3.1@sha256:d95bf2a2b3e095e5b02960ab4ddd4674d798a1493ed0dc5cf427c77a5ed90ed3 done
#4 extracting sha256:df9b9388f04ad6279a7410b85cedfdcb2208c0a003da7ab5613af71079148139
#4 sha256:3ae3a38ed752842e75d1609c931b29e565b53c24229c87bf1ba64251b5f1f094 1.74MB / 1.74MB 0.1s done
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#4 sha256:df9b9388f04ad6279a7410b85cedfdcb2208c0a003da7ab5613af71079148139 2.81MB / 2.81MB 0.1s done
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#4 sha256:2c56128c63bdf4a1d571ed930304f4eb77e8e2fde7ce03ddf6073e3df9abf8ad 5.24MB / 8.65MB 0.2s
#4 sha256:6c2be99410893469a9e0d8f0ff537b22f651479bf64c5dcf269d2e5267e85749 1.05MB / 20.91MB 0.2s
#4 extracting sha256:df9b9388f04ad6279a7410b85cedfdcb2208c0a003da7ab5613af71079148139 0.2s done
#4 sha256:d772c6b09cca24a6ec7cb06facff8b7be509b608330bd035f91b70388a94d3b4 29.00MB / 31.26MB 0.3s
#4 sha256:2c56128c63bdf4a1d571ed930304f4eb77e8e2fde7ce03ddf6073e3df9abf8ad 8.65MB / 8.65MB 0.3s done
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#4 sha256:5a0c86bcd85d690fae1d36f59c4041c4142835310a431e3f1b00446763d7db73 0B / 105.91MB 0.3s
#4 extracting sha256:3ae3a38ed752842e75d1609c931b29e565b53c24229c87bf1ba64251b5f1f094
#4 sha256:d772c6b09cca24a6ec7cb06facff8b7be509b608330bd035f91b70388a94d3b4 31.26MB / 31.26MB 0.4s done
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#4 sha256:5a0c86bcd85d690fae1d36f59c4041c4142835310a431e3f1b00446763d7db73 8.39MB / 105.91MB 0.4s
#4 extracting sha256:3ae3a38ed752842e75d1609c931b29e565b53c24229c87bf1ba64251b5f1f094 0.1s done
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#4 sha256:4937da28ea60b32af53a8d507ea830228a05f22a7be2ae1ef0134bcd0e3bafba 0B / 68.90MB 0.4s
#4 sha256:5a0c86bcd85d690fae1d36f59c4041c4142835310a431e3f1b00446763d7db73 18.87MB / 105.91MB 0.5s
#4 sha256:5e733ff9c30825005ec05ee10b784276e8034171be7eeaa10d6f876fc7bb5383 4.19MB / 12.80MB 0.5s
#4 sha256:5a0c86bcd85d690fae1d36f59c4041c4142835310a431e3f1b00446763d7db73 44.80MB / 105.91MB 0.7s
#4 sha256:5e733ff9c30825005ec05ee10b784276e8034171be7eeaa10d6f876fc7bb5383 12.80MB / 12.80MB 0.6s done
#4 sha256:4937da28ea60b32af53a8d507ea830228a05f22a7be2ae1ef0134bcd0e3bafba 32.51MB / 68.90MB 0.7s
#4 extracting sha256:d772c6b09cca24a6ec7cb06facff8b7be509b608330bd035f91b70388a94d3b4
#4 sha256:16def9f17d8d9988a074a1d3ae42cb041b261068b3a455c99141bb8df243e9a4 829.24kB / 829.24kB 0.7s
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#4 sha256:4937da28ea60b32af53a8d507ea830228a05f22a7be2ae1ef0134bcd0e3bafba 61.87MB / 68.90MB 0.9s
#4 sha256:5a0c86bcd85d690fae1d36f59c4041c4142835310a431e3f1b00446763d7db73 92.27MB / 105.91MB 1.0s
#4 sha256:4937da28ea60b32af53a8d507ea830228a05f22a7be2ae1ef0134bcd0e3bafba 68.90MB / 68.90MB 1.0s done
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#4 sha256:5a0c86bcd85d690fae1d36f59c4041c4142835310a431e3f1b00446763d7db73 105.91MB / 105.91MB 1.3s done
#4 extracting sha256:d772c6b09cca24a6ec7cb06facff8b7be509b608330bd035f91b70388a94d3b4 0.9s done
#4 extracting sha256:2c56128c63bdf4a1d571ed930304f4eb77e8e2fde7ce03ddf6073e3df9abf8ad 0.1s
#4 extracting sha256:2c56128c63bdf4a1d571ed930304f4eb77e8e2fde7ce03ddf6073e3df9abf8ad 0.2s done
#4 extracting sha256:6c2be99410893469a9e0d8f0ff537b22f651479bf64c5dcf269d2e5267e85749
#4 extracting sha256:6c2be99410893469a9e0d8f0ff537b22f651479bf64c5dcf269d2e5267e85749 0.4s done
#4 extracting sha256:5a0c86bcd85d690fae1d36f59c4041c4142835310a431e3f1b00446763d7db73
#4 extracting sha256:5a0c86bcd85d690fae1d36f59c4041c4142835310a431e3f1b00446763d7db73 2.7s done
#4 extracting sha256:5e733ff9c30825005ec05ee10b784276e8034171be7eeaa10d6f876fc7bb5383 0.1s
#4 extracting sha256:5e733ff9c30825005ec05ee10b784276e8034171be7eeaa10d6f876fc7bb5383 0.4s done
#4 extracting sha256:4937da28ea60b32af53a8d507ea830228a05f22a7be2ae1ef0134bcd0e3bafba
#4 extracting sha256:4937da28ea60b32af53a8d507ea830228a05f22a7be2ae1ef0134bcd0e3bafba 0.8s done
#4 extracting sha256:16def9f17d8d9988a074a1d3ae42cb041b261068b3a455c99141bb8df243e9a4 0.0s done
#4 extracting sha256:03ac08f8f1d3c646d8f456ad0e2307b56511e692bcef7a4d67ec194ba81f59e7 done
#4 DONE 7.8s
#5 [2/2] RUN :
#5 DONE 0.2s
#6 exporting to image
#6 exporting layers
#6 exporting layers 1.0s done
#6 writing image sha256:3dde9e45776a2e1e480c30d9b888632f311c09338549cbd8ff7496581582ef9f done
#6 naming to docker.io/library/example_csharp:test done
#6 DONE 1.0s
====================================================================
+/tmp/viash_test_example_csharp15325612198478877336/test_test/test_executable
>>> Create input test file
>>> Run executable
>>> Check whether output file exists
>>> Check whether input and output file are the same
>>> Test finished successfully
====================================================================
SUCCESS! All 1 out of 1 test scripts succeeded!
Cleaning up temporary directory
viash test config.vsh.yaml
Running tests in temporary directory: '/tmp/viash_test_example_js6776078726930369677'
====================================================================
+/tmp/viash_test_example_js6776078726930369677/build_executable/example_js ---verbosity 6 ---setup cachedbuild
[notice] Building container 'example_js:test' with Dockerfile
[info] Running 'docker build -t example_js:test /tmp/viash_test_example_js6776078726930369677/build_executable -f /tmp/viash_test_example_js6776078726930369677/build_executable/tmp/dockerbuild-example_js-dYur9H/Dockerfile'
#0 building with "default" instance using docker driver
#1 [internal] load build definition from Dockerfile
#1 transferring dockerfile: 297B done
#1 DONE 0.0s
#2 [internal] load .dockerignore
#2 transferring context: 2B done
#2 DONE 0.0s
#3 [internal] load metadata for docker.io/library/node:19-bullseye-slim
#3 DONE 0.2s
#4 [1/2] FROM docker.io/library/node:19-bullseye-slim@sha256:f58f1fcf5c9ff9e3752993edb4ed6dbd35697124c85a43f3b97aa054500b0534
#4 resolve docker.io/library/node:19-bullseye-slim@sha256:f58f1fcf5c9ff9e3752993edb4ed6dbd35697124c85a43f3b97aa054500b0534 done
#4 sha256:56db04c463e993ac037103947cd590d52fcddcb17ad04285a0ca4c3510c0738c 6.29MB / 46.62MB 0.1s
#4 sha256:477c7ebfb8500396b86c69952acb17b909a0a63da41e03dd4046e2c809722c6e 0B / 2.76MB 0.1s
#4 sha256:f58f1fcf5c9ff9e3752993edb4ed6dbd35697124c85a43f3b97aa054500b0534 1.21kB / 1.21kB done
#4 sha256:63b5ca0f90dbaf64465a83d46276e133eab30410f642808d158bf98928811999 1.37kB / 1.37kB done
#4 sha256:adbc02574b521bb652d771c8ac0282c724b9fe90c001f3bab0825c32092c9036 6.84kB / 6.84kB done
#4 sha256:f03b40093957615593f2ed142961afb6b540507e0b47e3f7626ba5e02efbbbf1 9.85MB / 31.40MB 0.1s
#4 sha256:0bfad7312c25e414fc3d0e3640a77bd4b5c74d2118595670999afef9758cb49b 4.19kB / 4.19kB 0.1s done
#4 sha256:56db04c463e993ac037103947cd590d52fcddcb17ad04285a0ca4c3510c0738c 25.17MB / 46.62MB 0.2s
#4 sha256:477c7ebfb8500396b86c69952acb17b909a0a63da41e03dd4046e2c809722c6e 2.76MB / 2.76MB 0.2s done
#4 sha256:f03b40093957615593f2ed142961afb6b540507e0b47e3f7626ba5e02efbbbf1 23.07MB / 31.40MB 0.2s
#4 sha256:8bb4aa3e51be63d4a2e5bd30ab9cd478a916ed3c5c0212a44b96fd743e0e0f2f 450B / 450B 0.2s done
#4 sha256:56db04c463e993ac037103947cd590d52fcddcb17ad04285a0ca4c3510c0738c 44.04MB / 46.62MB 0.3s
#4 sha256:f03b40093957615593f2ed142961afb6b540507e0b47e3f7626ba5e02efbbbf1 31.40MB / 31.40MB 0.3s done
#4 extracting sha256:f03b40093957615593f2ed142961afb6b540507e0b47e3f7626ba5e02efbbbf1
#4 sha256:56db04c463e993ac037103947cd590d52fcddcb17ad04285a0ca4c3510c0738c 46.62MB / 46.62MB 0.4s done
#4 extracting sha256:f03b40093957615593f2ed142961afb6b540507e0b47e3f7626ba5e02efbbbf1 1.3s done
#4 extracting sha256:0bfad7312c25e414fc3d0e3640a77bd4b5c74d2118595670999afef9758cb49b done
#4 extracting sha256:56db04c463e993ac037103947cd590d52fcddcb17ad04285a0ca4c3510c0738c
#4 extracting sha256:56db04c463e993ac037103947cd590d52fcddcb17ad04285a0ca4c3510c0738c 2.1s done
#4 extracting sha256:477c7ebfb8500396b86c69952acb17b909a0a63da41e03dd4046e2c809722c6e 0.1s done
#4 extracting sha256:8bb4aa3e51be63d4a2e5bd30ab9cd478a916ed3c5c0212a44b96fd743e0e0f2f done
#4 DONE 4.6s
#5 [2/2] RUN :
#5 DONE 0.2s
#6 exporting to image
#6 exporting layers
#6 exporting layers 0.6s done
#6 writing image sha256:48ab32a0acf11cc817065bd80048cd95965bafbf63e091b4feb0ef38d390c5fe done
#6 naming to docker.io/library/example_js:test done
#6 DONE 0.6s
====================================================================
+/tmp/viash_test_example_js6776078726930369677/test_test/test_executable
>>> Create input test file
>>> Run executable
>>> Check whether output file exists
>>> Check whether input and output file are the same
>>> Test finished successfully
====================================================================
SUCCESS! All 1 out of 1 test scripts succeeded!
Cleaning up temporary directory
viash test config.vsh.yaml
Running tests in temporary directory: '/tmp/viash_test_example_python7942918746990080277'
====================================================================
+/tmp/viash_test_example_python7942918746990080277/build_executable/example_python ---verbosity 6 ---setup cachedbuild
[notice] Building container 'example_python:test' with Dockerfile
[info] Running 'docker build -t example_python:test /tmp/viash_test_example_python7942918746990080277/build_executable -f /tmp/viash_test_example_python7942918746990080277/build_executable/tmp/dockerbuild-example_python-320yx5/Dockerfile'
#0 building with "default" instance using docker driver
#1 [internal] load build definition from Dockerfile
#1 transferring dockerfile: 296B done
#1 DONE 0.0s
#2 [internal] load .dockerignore
#2 transferring context: 2B done
#2 DONE 0.0s
#3 [internal] load metadata for docker.io/library/python:3.10-slim
#3 DONE 0.2s
#4 [1/2] FROM docker.io/library/python:3.10-slim@sha256:dc88dfceb13b58dc6ff12840c28f6c774a8692945db4e9c2dabeaf939b7f2614
#4 resolve docker.io/library/python:3.10-slim@sha256:dc88dfceb13b58dc6ff12840c28f6c774a8692945db4e9c2dabeaf939b7f2614 done
#4 sha256:d364435d339ad318ac4c533b9fbe709739f9ba006b0721fd25e8592d0bb857cb 1.37kB / 1.37kB done
#4 sha256:856cd96b64ca9340b79fc10ac2b4a03853e3669063e870ecca5f37b4c2a0f286 6.94kB / 6.94kB done
#4 sha256:a803e7c4b030119420574a882a52b6431e160fceb7620f61b525d49bc2d58886 29.12MB / 29.12MB 0.2s done
#4 sha256:bf3336e84c8e00632cdea35b18fec9a5691711bdc8ac885e3ef54a3d5ff500ba 3.50MB / 3.50MB 0.1s done
#4 sha256:1ff59fb8f31eb4307482ef0594543ba5f3eec5dbb2ece5b8c9934e87d47195a3 12.38MB / 12.38MB 0.2s done
#4 sha256:28f27f88ce0a26df3ff14f0c45de470b67fdf139c62866abdfdc36a918cecd89 242B / 242B 0.1s done
#4 sha256:cf8b09e0fea29a0efd2bbb3128e84e53e8b0e42d2e468c5efcd1ec9980a2c65f 3.36MB / 3.36MB 0.2s done
#4 sha256:dc88dfceb13b58dc6ff12840c28f6c774a8692945db4e9c2dabeaf939b7f2614 1.65kB / 1.65kB done
#4 extracting sha256:a803e7c4b030119420574a882a52b6431e160fceb7620f61b525d49bc2d58886 0.1s
#4 extracting sha256:a803e7c4b030119420574a882a52b6431e160fceb7620f61b525d49bc2d58886 1.2s done
#4 extracting sha256:bf3336e84c8e00632cdea35b18fec9a5691711bdc8ac885e3ef54a3d5ff500ba
#4 extracting sha256:bf3336e84c8e00632cdea35b18fec9a5691711bdc8ac885e3ef54a3d5ff500ba 0.1s done
#4 extracting sha256:1ff59fb8f31eb4307482ef0594543ba5f3eec5dbb2ece5b8c9934e87d47195a3
#4 extracting sha256:1ff59fb8f31eb4307482ef0594543ba5f3eec5dbb2ece5b8c9934e87d47195a3 0.4s done
#4 extracting sha256:28f27f88ce0a26df3ff14f0c45de470b67fdf139c62866abdfdc36a918cecd89 done
#4 extracting sha256:cf8b09e0fea29a0efd2bbb3128e84e53e8b0e42d2e468c5efcd1ec9980a2c65f
#4 extracting sha256:cf8b09e0fea29a0efd2bbb3128e84e53e8b0e42d2e468c5efcd1ec9980a2c65f 0.3s done
#4 DONE 2.6s
#5 [2/2] RUN :
#5 DONE 0.2s
#6 exporting to image
#6 exporting layers
#6 exporting layers 0.2s done
#6 writing image sha256:f384b9431e77be7ecb79eda2dc5542c659a832d148e72eda2219debc3ad1cab3 done
#6 naming to docker.io/library/example_python:test done
#6 DONE 0.2s
====================================================================
+/tmp/viash_test_example_python7942918746990080277/test_test/test_executable
Copying 'foo.txt' to 'bar.txt'.
>>> Create input test file
>>> Run executable
>>> Check whether output file exists
>>> Check whether input and output file are the same
>>> Test finished successfully
====================================================================
SUCCESS! All 1 out of 1 test scripts succeeded!
Cleaning up temporary directory
viash test config.vsh.yaml
Running tests in temporary directory: '/tmp/viash_test_example_r14123843880006207083'
====================================================================
+/tmp/viash_test_example_r14123843880006207083/build_executable/example_r ---verbosity 6 ---setup cachedbuild
[notice] Building container 'example_r:test' with Dockerfile
[info] Running 'docker build -t example_r:test /tmp/viash_test_example_r14123843880006207083/build_executable -f /tmp/viash_test_example_r14123843880006207083/build_executable/tmp/dockerbuild-example_r-aL0BQ5/Dockerfile'
#0 building with "default" instance using docker driver
#1 [internal] load .dockerignore
#1 transferring context: 2B done
#1 DONE 0.0s
#2 [internal] load build definition from Dockerfile
#2 transferring dockerfile: 297B done
#2 DONE 0.0s
#3 [internal] load metadata for docker.io/eddelbuettel/r2u:22.04
#3 DONE 0.2s
#4 [1/2] FROM docker.io/eddelbuettel/r2u:22.04@sha256:9cd35dcd5c3b1fbb4cecdf384ccb77c142410fac393e836662fbb7b5400dc614
#4 resolve docker.io/eddelbuettel/r2u:22.04@sha256:9cd35dcd5c3b1fbb4cecdf384ccb77c142410fac393e836662fbb7b5400dc614 done
#4 sha256:9cd35dcd5c3b1fbb4cecdf384ccb77c142410fac393e836662fbb7b5400dc614 954B / 954B done
#4 sha256:bcc5a629ed6dc92813dc221d48ecdf39d9796525be0a7a3a02e0159a4d56d66f 5.59kB / 5.59kB done
#4 sha256:e96e057aae67380a4ddb16c337c5c3669d97fdff69ec537f02aa2cc30d814281 6.29MB / 30.43MB 0.1s
#4 sha256:4c487cbab07b91e904da6e99c1c8a54d43b794ce37b7038145e55e11b684f6ab 0B / 37.14MB 0.1s
#4 sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 9.44MB / 233.24MB 0.1s
#4 sha256:e96e057aae67380a4ddb16c337c5c3669d97fdff69ec537f02aa2cc30d814281 17.83MB / 30.43MB 0.2s
#4 sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 29.36MB / 233.24MB 0.2s
#4 sha256:e96e057aae67380a4ddb16c337c5c3669d97fdff69ec537f02aa2cc30d814281 30.43MB / 30.43MB 0.3s done
#4 sha256:4c487cbab07b91e904da6e99c1c8a54d43b794ce37b7038145e55e11b684f6ab 17.92MB / 37.14MB 0.4s
#4 sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 58.24MB / 233.24MB 0.4s
#4 sha256:4c487cbab07b91e904da6e99c1c8a54d43b794ce37b7038145e55e11b684f6ab 33.55MB / 37.14MB 0.5s
#4 sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 73.40MB / 233.24MB 0.5s
#4 extracting sha256:e96e057aae67380a4ddb16c337c5c3669d97fdff69ec537f02aa2cc30d814281
#4 sha256:4c487cbab07b91e904da6e99c1c8a54d43b794ce37b7038145e55e11b684f6ab 37.14MB / 37.14MB 0.6s done
#4 sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 85.98MB / 233.24MB 0.6s
#4 sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 101.71MB / 233.24MB 0.7s
#4 sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 116.39MB / 233.24MB 0.8s
#4 sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 134.22MB / 233.24MB 0.9s
#4 sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 166.72MB / 233.24MB 1.1s
#4 sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 185.60MB / 233.24MB 1.2s
#4 sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 204.47MB / 233.24MB 1.3s
#4 sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 222.79MB / 233.24MB 1.4s
#4 extracting sha256:e96e057aae67380a4ddb16c337c5c3669d97fdff69ec537f02aa2cc30d814281 1.4s done
#4 sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 233.24MB / 233.24MB 2.3s done
#4 extracting sha256:4c487cbab07b91e904da6e99c1c8a54d43b794ce37b7038145e55e11b684f6ab
#4 extracting sha256:4c487cbab07b91e904da6e99c1c8a54d43b794ce37b7038145e55e11b684f6ab 0.7s done
#4 extracting sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 0.1s
#4 extracting sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 5.1s
#4 extracting sha256:7a00de0f723d8910528563cf35ef37d9c519d3973b9427ef1af57e97c951002f 6.7s done
#4 DONE 12.5s
#5 [2/2] RUN :
#5 DONE 0.2s
#6 exporting to image
#6 exporting layers
#6 exporting layers 0.6s done
#6 writing image sha256:38bcb7de301247a4332a2718c72e76bd759f846a84a4f751f408c07d2addbc9f done
#6 naming to docker.io/library/example_r:test done
#6 DONE 0.6s
====================================================================
+/tmp/viash_test_example_r14123843880006207083/test_test/test_executable
>>> Create input test file
>>> Run executable
Copying 'foo.txt' to 'bar.txt'.
[1] TRUE
>>> Check whether output file exists
>>> Check whether input and output file are the same
>>> Test finished successfully
====================================================================
SUCCESS! All 1 out of 1 test scripts succeeded!
Cleaning up temporary directory
viash test config.vsh.yaml
Running tests in temporary directory: '/tmp/viash_test_example_scala2740247678861034349'
====================================================================
+/tmp/viash_test_example_scala2740247678861034349/build_executable/example_scala ---verbosity 6 ---setup cachedbuild
[notice] Building container 'example_scala:test' with Dockerfile
[info] Running 'docker build -t example_scala:test /tmp/viash_test_example_scala2740247678861034349/build_executable -f /tmp/viash_test_example_scala2740247678861034349/build_executable/tmp/dockerbuild-example_scala-s34BGk/Dockerfile'
#0 building with "default" instance using docker driver
#1 [internal] load build definition from Dockerfile
#1 transferring dockerfile: 333B done
#1 DONE 0.0s
#2 [internal] load .dockerignore
#2 transferring context: 2B done
#2 DONE 0.0s
#3 [internal] load metadata for docker.io/sbtscala/scala-sbt:eclipse-temurin-19_36_1.7.2_2.13.10
#3 DONE 0.2s
#4 [1/2] FROM docker.io/sbtscala/scala-sbt:eclipse-temurin-19_36_1.7.2_2.13.10@sha256:440234e283754375d5ab6bcb35e2d470f9dabeaaeb639d8c0708fac2d3707e0c
#4 resolve docker.io/sbtscala/scala-sbt:eclipse-temurin-19_36_1.7.2_2.13.10@sha256:440234e283754375d5ab6bcb35e2d470f9dabeaaeb639d8c0708fac2d3707e0c done
#4 sha256:301a8b74f71f85f3a31e9c7e7fedd5b001ead5bcf895bc2911c1d260e06bd987 12.58MB / 30.43MB 0.1s
#4 sha256:c5c735a83dbd58e1c83f8d52abdc51068e27c00405f53d59802d4954a6b5398a 7.34MB / 16.99MB 0.1s
#4 sha256:06478611ba16efc6663ccf5f22a29c990c53aed6848bc58c54c67dc32d8aef13 3.04kB / 3.04kB done
#4 sha256:5fb9fa7513e6a72bf7daf0a75e97c441f1ed7ff69c8609d1c429fdf3a6dc846b 0B / 200.85MB 0.1s
#4 sha256:76808e2ea8df2d9cac1d275426e51a2190369f706076c55ac2da3823bef0a019 10.89kB / 10.89kB done
#4 sha256:440234e283754375d5ab6bcb35e2d470f9dabeaaeb639d8c0708fac2d3707e0c 743B / 743B done
#4 sha256:301a8b74f71f85f3a31e9c7e7fedd5b001ead5bcf895bc2911c1d260e06bd987 30.43MB / 30.43MB 0.2s done
#4 sha256:c5c735a83dbd58e1c83f8d52abdc51068e27c00405f53d59802d4954a6b5398a 16.99MB / 16.99MB 0.3s done
#4 sha256:5fb9fa7513e6a72bf7daf0a75e97c441f1ed7ff69c8609d1c429fdf3a6dc846b 23.07MB / 200.85MB 0.3s
#4 extracting sha256:301a8b74f71f85f3a31e9c7e7fedd5b001ead5bcf895bc2911c1d260e06bd987
#4 sha256:2af8e2a543d81b57575a2e457bd1e98ffc061b15639dac3be5ff6c2702b9ea1a 175B / 175B 0.3s done
#4 sha256:14d68137d870fdc4bc849fbe5c5571ca3e6d9a7b2c5bf1c7e928ccf716dd3b4a 1.05MB / 29.75MB 0.3s
#4 sha256:320659737461e071e3d809231861a7487daaa79805c57f97015ff020f34a939a 0B / 23.71MB 0.3s
#4 sha256:5fb9fa7513e6a72bf7daf0a75e97c441f1ed7ff69c8609d1c429fdf3a6dc846b 36.70MB / 200.85MB 0.4s
#4 sha256:14d68137d870fdc4bc849fbe5c5571ca3e6d9a7b2c5bf1c7e928ccf716dd3b4a 16.78MB / 29.75MB 0.4s
#4 sha256:320659737461e071e3d809231861a7487daaa79805c57f97015ff020f34a939a 4.19MB / 23.71MB 0.4s
#4 sha256:5fb9fa7513e6a72bf7daf0a75e97c441f1ed7ff69c8609d1c429fdf3a6dc846b 57.67MB / 200.85MB 0.6s
#4 sha256:14d68137d870fdc4bc849fbe5c5571ca3e6d9a7b2c5bf1c7e928ccf716dd3b4a 29.75MB / 29.75MB 0.6s done
#4 sha256:320659737461e071e3d809231861a7487daaa79805c57f97015ff020f34a939a 23.71MB / 23.71MB 0.6s
#4 sha256:1dea7716181a505cea41832dc84691b858a8f64471cb352d8c29cec06e428aeb 0B / 40.48MB 0.6s
#4 sha256:5fb9fa7513e6a72bf7daf0a75e97c441f1ed7ff69c8609d1c429fdf3a6dc846b 78.33MB / 200.85MB 0.8s
#4 sha256:320659737461e071e3d809231861a7487daaa79805c57f97015ff020f34a939a 23.71MB / 23.71MB 0.6s done
#4 sha256:1dea7716181a505cea41832dc84691b858a8f64471cb352d8c29cec06e428aeb 16.78MB / 40.48MB 0.8s
#4 sha256:c9480a4b593fb5abc117a5e01c80d8495c9fd89e743757730c712545f425c9f3 183B / 183B 0.6s done
#4 sha256:812216efaf878f5ff8086b6efdccec1cb090228107efd62db47d048c927c4f6a 4.33kB / 4.33kB 0.7s done
#4 sha256:bb7a0c6ab9c129a399a3c8f034cd0de30406766d61a6694f150b4ab9e64c560c 0B / 214.15MB 0.8s
#4 sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1 32B / 32B 0.8s done
#4 sha256:5fb9fa7513e6a72bf7daf0a75e97c441f1ed7ff69c8609d1c429fdf3a6dc846b 89.13MB / 200.85MB 0.9s
#4 sha256:1dea7716181a505cea41832dc84691b858a8f64471cb352d8c29cec06e428aeb 26.31MB / 40.48MB 0.9s
#4 sha256:1dea7716181a505cea41832dc84691b858a8f64471cb352d8c29cec06e428aeb 37.75MB / 40.48MB 1.0s
#4 sha256:bb7a0c6ab9c129a399a3c8f034cd0de30406766d61a6694f150b4ab9e64c560c 18.87MB / 214.15MB 1.0s
#4 sha256:5fb9fa7513e6a72bf7daf0a75e97c441f1ed7ff69c8609d1c429fdf3a6dc846b 130.02MB / 200.85MB 1.2s
#4 sha256:1dea7716181a505cea41832dc84691b858a8f64471cb352d8c29cec06e428aeb 40.48MB / 40.48MB 1.1s done
#4 sha256:bb7a0c6ab9c129a399a3c8f034cd0de30406766d61a6694f150b4ab9e64c560c 44.04MB / 214.15MB 1.2s
#4 sha256:2c0021742fe2b9491f62c3d89da10492c175081bd17d77efd0f22a298c37ad64 222B / 222B 1.1s done
#4 sha256:5fb9fa7513e6a72bf7daf0a75e97c441f1ed7ff69c8609d1c429fdf3a6dc846b 147.85MB / 200.85MB 1.3s
#4 sha256:bb7a0c6ab9c129a399a3c8f034cd0de30406766d61a6694f150b4ab9e64c560c 60.82MB / 214.15MB 1.3s
#4 sha256:5fb9fa7513e6a72bf7daf0a75e97c441f1ed7ff69c8609d1c429fdf3a6dc846b 158.33MB / 200.85MB 1.4s
#4 sha256:5fb9fa7513e6a72bf7daf0a75e97c441f1ed7ff69c8609d1c429fdf3a6dc846b 187.70MB / 200.85MB 1.6s
#4 sha256:bb7a0c6ab9c129a399a3c8f034cd0de30406766d61a6694f150b4ab9e64c560c 98.57MB / 214.15MB 1.6s
#4 sha256:5fb9fa7513e6a72bf7daf0a75e97c441f1ed7ff69c8609d1c429fdf3a6dc846b 200.85MB / 200.85MB 1.7s
#4 sha256:bb7a0c6ab9c129a399a3c8f034cd0de30406766d61a6694f150b4ab9e64c560c 110.10MB / 214.15MB 1.7s
#4 sha256:bb7a0c6ab9c129a399a3c8f034cd0de30406766d61a6694f150b4ab9e64c560c 123.73MB / 214.15MB 1.8s
#4 sha256:bb7a0c6ab9c129a399a3c8f034cd0de30406766d61a6694f150b4ab9e64c560c 143.65MB / 214.15MB 1.9s
#4 sha256:bb7a0c6ab9c129a399a3c8f034cd0de30406766d61a6694f150b4ab9e64c560c 157.29MB / 214.15MB 2.0s
#4 sha256:bb7a0c6ab9c129a399a3c8f034cd0de30406766d61a6694f150b4ab9e64c560c 189.79MB / 214.15MB 2.2s
#4 sha256:bb7a0c6ab9c129a399a3c8f034cd0de30406766d61a6694f150b4ab9e64c560c 205.52MB / 214.15MB 2.3s
#4 sha256:5fb9fa7513e6a72bf7daf0a75e97c441f1ed7ff69c8609d1c429fdf3a6dc846b 200.85MB / 200.85MB 2.4s done
#4 extracting sha256:301a8b74f71f85f3a31e9c7e7fedd5b001ead5bcf895bc2911c1d260e06bd987 2.3s done
#4 sha256:bb7a0c6ab9c129a399a3c8f034cd0de30406766d61a6694f150b4ab9e64c560c 214.15MB / 214.15MB 3.4s done
#4 extracting sha256:c5c735a83dbd58e1c83f8d52abdc51068e27c00405f53d59802d4954a6b5398a 0.1s
#4 extracting sha256:c5c735a83dbd58e1c83f8d52abdc51068e27c00405f53d59802d4954a6b5398a 0.9s done
#4 extracting sha256:5fb9fa7513e6a72bf7daf0a75e97c441f1ed7ff69c8609d1c429fdf3a6dc846b
#4 extracting sha256:5fb9fa7513e6a72bf7daf0a75e97c441f1ed7ff69c8609d1c429fdf3a6dc846b 2.4s done
#4 extracting sha256:2af8e2a543d81b57575a2e457bd1e98ffc061b15639dac3be5ff6c2702b9ea1a done
#4 extracting sha256:14d68137d870fdc4bc849fbe5c5571ca3e6d9a7b2c5bf1c7e928ccf716dd3b4a
#4 extracting sha256:14d68137d870fdc4bc849fbe5c5571ca3e6d9a7b2c5bf1c7e928ccf716dd3b4a 0.6s done
#4 extracting sha256:320659737461e071e3d809231861a7487daaa79805c57f97015ff020f34a939a
#4 extracting sha256:320659737461e071e3d809231861a7487daaa79805c57f97015ff020f34a939a 0.2s done
#4 extracting sha256:1dea7716181a505cea41832dc84691b858a8f64471cb352d8c29cec06e428aeb
#4 extracting sha256:1dea7716181a505cea41832dc84691b858a8f64471cb352d8c29cec06e428aeb 1.4s done
#4 extracting sha256:c9480a4b593fb5abc117a5e01c80d8495c9fd89e743757730c712545f425c9f3
#4 extracting sha256:c9480a4b593fb5abc117a5e01c80d8495c9fd89e743757730c712545f425c9f3 done
#4 extracting sha256:812216efaf878f5ff8086b6efdccec1cb090228107efd62db47d048c927c4f6a done
#4 extracting sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1 done
#4 extracting sha256:bb7a0c6ab9c129a399a3c8f034cd0de30406766d61a6694f150b4ab9e64c560c
#4 extracting sha256:bb7a0c6ab9c129a399a3c8f034cd0de30406766d61a6694f150b4ab9e64c560c 1.9s done
#4 extracting sha256:2c0021742fe2b9491f62c3d89da10492c175081bd17d77efd0f22a298c37ad64 done
#4 DONE 14.4s
#5 [2/2] RUN :
#5 DONE 0.2s
#6 exporting to image
#6 exporting layers
#6 exporting layers 0.6s done
#6 writing image sha256:c69e911ec92eb0af1a288ce224e3e5e2b0ecb724075efe78a42d1569e91290c2 done
#6 naming to docker.io/library/example_scala:test done
#6 DONE 0.6s
====================================================================
+/tmp/viash_test_example_scala2740247678861034349/test_test/test_executable
warning: 1 deprecation
warning: 1 deprecation (since 2.13.3)
warning: 2 deprecations in total; re-run with -deprecation for details
>>> Create input test file
>>> Run executable
warning: 1 deprecation; re-run with -deprecation for details
Copying 'foo.txt' to 'bar.txt'.
>>> Check whether output file exists
>>> Check whether input and output file are the same
>>> Test finished successfully
====================================================================
SUCCESS! All 1 out of 1 test scripts succeeded!
Cleaning up temporary directory
When running viash test
, Viash will follow the following steps:
Create a temporary directory
Build the component into the main executable
(Re-)build the Docker image for the component
Iterate over all unit test scripts:
Build the unit test into an executable
Run the unit test, passing the main executable as an argument
Return exit code 0 if all of the above steps succeed, otherwise 0
Bonus: unit testing all of the components
If you have multiple Viash components located in a directory called src/
, what happens when you run the following?
viash ns test --parallel --src src/